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Biology subjects

Almazan, F.

Publications and source records attributed to Almazan, F..

3 recordsLinked to original sources

Viral transport in evaporating sessile model respiratory droplets

Viral particles, or virions, may remain infectious in the dry residue of respiratory droplets for times as long as hours. This is counterintuitive, since salt concentration increases dramatically as the drops water evaporates, making the drop a harsh environment for virions. It has been hypothesized that the drop components (mainly salt and the glycoprotein mucin) segregate during the evaporation process, with virions being transported away from salt deposits. This would protect them from the salts damaging effects. Thus, understanding where virions reside in a drop residue is essential to disentangle the physico-chemical mechanisms that drive their inactivation. However, determining the virion location in an environment as heterogeneous and complex as a respiratory drop is challenging. Here we show experimentally that virions in the drops dry residue are found mainly forming aggregates in protein-rich regions, outside salt crystals. The mechanism yielding the observed viral spatial distribution can be found in the internal flow phenomena within the droplet, which are described using numerical simulations. We anticipate our results to be relevant to explain the discrepancies in the infectivity decay rates measured in respiratory drops between previous reported studies.

biophysics↗

Key role of TLR3 in type I IFN expression and apoptosis induction in IBDV-infected chicken fibroblast cells

Infectious Bursal Disease Virus (IBDV) (Avibirnavirus genus, Birnaviridae family) is a non-enveloped virus with a double-stranded RNA (dsRNA) genome. IBDV causes a highly contagious and immunosuppressive disease in domestic chickens (Gallus gallus), representing a major threat to the global poultry industry. Apoptotic cell death and exacerbated innate immune responses have been implicated in IBDV pathogenesis. Previous studies from our laboratory demonstrated the crucial role of type I interferon (IFN) in triggering apoptosis in IBDV-infected cell cultures. Genomic IBDV dsRNA is recognized by the cytoplasmic pattern recognition receptor (PRR) melanoma differentiation-associated gene 5 (MDA5) in chicken cells, triggering type I IFN responses. However, the contribution of the endosomal PRR Toll-like receptor 3 (TLR3) dsRNA sensor on type I IFN production upon IBDV infection has not been studied, despite several studies have demonstrated that its expression is significantly upregulated upon IBDV infection. Here, we demonstrate that ablation of TLR3 gene expression in DF-1 chicken fibroblasts results in a complete blockade of IBDV-induced apoptosis, a marked reduction in IFN production, and a significant enhancement of virus progeny yields. Notably, this effect appears to be specific to IBDV, as similar outcomes were not observed with other RNA viruses. Our findings also suggest that TLR3 may also play a role in viral release into the extracellular space. Additionally, receptor interacting protein kinase 1 (RIPK1), a protein that interacts with TLR3 through the adaptor Toll/IL-1 receptor (TIR) domain-containing adaptor-inducing interferon-{beta} (TRIF), was shown to contribute to both IFN production and apoptosis in response to IBDV infection or dsRNA stimulation in DF-1 cells. Overall, this study provides new insights into the innate immune recognition of IBDV, highlighting the central role of TLR3 in mediating antiviral responses in chicken cells. Author summaryInfectious Bursal Disease Virus (IBDV) is the etiological agent of a devastating syndrome known as IBD or Gumboro disease, which affects domestic chickens (Gallus gallus), leading to significant economic losses in the poultry industry worldwide. The virus primarily targets immature B lymphocytes causing their killing by apoptosis, resulting in severe immunosuppression. Diverse studies have suggested that exacerbation of the innate immune response is related to IBDV pathogenesis. Here, we have investigated the role of the cellular sensor of double-stranded RNA (dsRNA) Toll-like receptor 3 (TLR3) on the fate of IBDV-infected cells. Deletion of the TLR3 gene completely blocks apoptosis induced in IBDV-infected DF-1 cells, drastically reduces interferon (IFN) production and improves viral replication efficiency. We also demonstrated the participation of receptor interacting protein kinase 1 (RIPK1), a known downstream mediator of TLR3, in both, IFN production and apoptosis induction in response to IBDV infection. These findings provide new molecular insights into the mechanisms underlying the robust type I IFN response observed during IBDV infection and contribute to a deeper understanding of IBDV pathogenesis.

microbiology↗

Rescue of SARS-CoV-2 from a single bacterial artificial chromosome

An infectious coronavirus disease 2019 (COVID-19) emerged in the city of Wuhan (China) in December 2019, causing a pandemic that has dramatically impacted public health and socioeconomic activities worldwide. A previously unknown coronavirus, Severe Acute Respiratory Syndrome CoV-2 (SARS-CoV-2), has been identified as the causative agent of COVID-19. To date, there are no United States (US) Food and Drug Administration (FDA)-approved vaccines or therapeutics available for the prevention or treatment of SARS-CoV-2 infection and/or associated COVID-19 disease, which has triggered a large influx of scientific efforts to develop countermeasures to control SARS-CoV-2 spread. To contribute to these efforts, we have developed an infectious cDNA clone of the SARS-CoV-2 USA-WA1/2020 strain based on the use of a bacterial artificial chromosome (BAC). Recombinant (r)SARS-CoV-2 was readily rescued by transfection of the BAC into Vero E6 cells. Importantly, the BAC-derived rSARS-CoV-2 exhibited growth properties and plaque sizes in cultured cells comparable to those of the SARS-CoV-2 natural isolate. Likewise, rSARS-CoV-2 showed similar levels of replication to that of the natural isolate in nasal turbinates and lungs of infected golden Syrian hamsters. This is, to our knowledge, the first BAC based reverse genetics system for the generation of infectious rSARS-CoV-2 that displays similar features in vivo to that of a natural viral isolate. This SARS-CoV-2 BAC-based reverse genetics will facilitate studies addressing several important questions in the biology of SARS-CoV-2, as well as the identification of antivirals and development of vaccines for the treatment of SARS-CoV-2 infection and associated COVID-19 disease.

microbiology↗