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Biology subjects

Allison, K. R.

Publications and source records attributed to Allison, K. R..

2 recordsLinked to original sources

Escherichia coli sister cells dynamically organize developmental rosettes

Rosettes are self-organizing, circular multicellular communities that initiate developmental processes, like organogenesis and embryogenesis, in complex organisms. Their formation results from the active repositioning of adhered sister cells and is thought to distinguish multicellular organisms form unicellular ones. Though common in eukaryotes, this multicellular behavior has not been reported in bacteria. In this study, we discovered that Escherichia coli forms rosettes by active sister cell repositioning. After division, sister cells "fold" to actively align at the 2- and 4-cell stages of clonal division, thereby producing rosettes with characteristic quatrefoil configuration. Analysis revealed folding follows an angular random walk, comprised of [~]1-{micro}m strokes and directional randomization. We further showed that this motion was produced by the flagellum, the extracellular tail whose rotation generates swimming motility. Rosette formation was found to require de novo flagella synthesis suggesting it must balance the opposing forces of Ag43 adhesion and flagellar propulsion. We went on to show that proper rosette formation was developmentally required for subsequent morphogenesis of multicellular chains, rpoS expression, and formation of hydrostatic clonal-chain biofilms. Moreover, we discovered self-folding rosette-like communities in the standard motility assay, indicating this behavior may be general to hydrostatic environments. This study establishes that self-organization of developmental rosettes is a cross-kingdom multicellular behavior. Our findings indicate the potential of targeting bacterial rosettes to interrupt biofilms or reduce their antibiotic tolerance.

systems biology↗

A Synthetic Biology Approach to Sequential Stripe Patterning and Somitogenesis

Reaction-diffusion (RD) based clock and wavefront model has long been proposed as the mechanism underlying biological pattern formation of repeated and segmented structures including somitogenesis. However, systematic molecular level understanding of the mechanism remains elusive, largely due to the lack of suitable experimental systems to probe RD quantitatively in vivo. Here we design a synthetic gene circuit that couples gene expression regulation (reaction) with quorum sensing (diffusion) to guide bacterial cells self-organizing into stripe patterns at both microscopic and colony scales. An experimentally verified mathematical model confirms that these periodic spatial structures are emerged from the integration of oscillatory gene expression as the molecular clock and the outward expanding diffusions as the propagating wavefront. Furthermore, our paired model-experiment data illustrate that the RD-based patterning is sensitive to initial conditions and can be modulated by external inducers to generate diverse patterns, including multiple-stripe pattern, target-like pattern and ring patterns with reversed fluorescence. Powered by our synthetic biology setup, we also test different topologies of gene networks and show that network motifs enabling robust oscillations are foundations of sequential stripe pattern formation. These results verified close connections between gene network topology and resulting RD driven pattern formation, offering an engineering approach to help understand biological development.

synthetic biology↗