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Biology subjects

Aldakul, Y. K.

Publications and source records attributed to Aldakul, Y. K..

2 recordsLinked to original sources

Atomic structure and plasticity of the MthK-CTX complex investigated by cryo-EM, NMR, and MD simulations

Scorpion toxins block potassium channels, disrupting cellular excitability and causing symptoms such as pain, muscle spasms, or paralysis. Here, we use an integrated structural biology approach to uncover the binding mode of the scorpion toxin charybdotoxin (CTX) to the MthK channel, a model system for human large-conductance potassium (BK) channels. Cryo-EM defines the overall architecture of the MthK-CTX complex, while complementary solution- and solid-state NMR experiments identify key binding residues and show that toxin engagement alters the selectivity filter (SF) ion configuration without rearranging the filter itself. NMR and MD simulations further reveal an anchoring lysine residue stably inserted into the SF, while other contacts undergo fast NMR timescale dynamics. Together, these findings explain how CTX-like toxins maintain exceptionally high affinity while tolerating binding across multiple K+ channel subtypes, paving the way for site-specific extracellular modulation.

molecular biology↗

Selectivity Filter Dynamics Define Ion Conductance and Selectivity Differences in CNG and HCN Channels

Cyclic nucleotide-gated (CNG) channels and hyperpolarization-activated cyclic nucleotide-gated (HCN) channels are key members of the cyclic nucleotide-activated ion channel family that translate intracellular cyclic nucleotide binding into electrical signals. Functionally, CNG channels drive large inward currents in photoreceptors and olfactory sensory neurons, whereas HCN channels are best known for their roles in pacemaker activity in the heart and the regulation of neuronal excitability. Despite their considerable sequence similarity and conserved overall architecture, these channels exhibit striking differences in ion conductance, K+ selectivity, and voltage dependence. Here, we performed microsecond-timescale atomistic molecular dynamics (MD) simulations to directly compare the ion conduction mechanisms of HCN and CNG channels, using the prototypical K+-selective channel MthK as a reference. Our simulations reproduced key features observed in single-channel patch-clamp electrophysiology and revealed that distinct selectivity filter architectures and dynamic behaviors are the primary determinants underlying the divergence in ion conductance and K+ selectivity between HCN and CNG channels. Together, these results provide a mechanistic framework for understanding the physiological roles of these channels and pave the way for the rational design of cation channels with tailored functional properties.

biophysics↗