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Biology subjects

Albornoz, F.

Publications and source records attributed to Albornoz, F..

3 recordsLinked to original sources

Capturing the missing gene content of elite wheat by analysis of wheat landraces

There is a need to breed superior wheat cultivars to meet increasing global food demand. However, modern cultivars have undergone a substantial loss of genetic diversity due to intensive breeding. A pool of genetic diversity remains untapped in wheat landraces, and pangenomics can help identify genes of potential agronomic importance in these old lines that can be applied to accelerate wheat improvement. Here, we have constructed the largest wheat pangenome to date, representing 1,061 diverse individuals (827 landraces and 234 modern cultivars) from 47 countries across six continents. We identified 10,426 predicted gene models specific to landraces that are enriched for functions associated with disease resistance, abiotic stress adaptation, and symbiosis. Our results reveal that landraces harbour an extensive repertoire of genes that are absent from modern wheat cultivars and provide a foundational resource for the systematic reintroduction of adaptive variation to enhance wheat resilience and sustainability in the face of climate change.

plant biology↗

Host specificity of fungal functional groups covaries with elevation: implications for intraspecific plant interactions

Plants of the same species can harbor shared enemies, resulting in indirect, intraspecific competition. When this competition is strong, there are fitness costs associated with growing near a same-species individual, termed Conspecific Negative Density Dependence (CNDD). Host-specific microbial pathogens are known mediators of this type of indirect, intraspecific plant competition, yet how these plant-microbe interactions vary with environmental context is less explored. Further, microbial pathogens and mutualists may jointly contribute to the relative strength of intraspecific competition, yet most studies focus only on pathogens. We use ITS metabarcoding to characterize soil and foliar fungal functional groups associated with individual trees of three dominant conifers in forests where the strength of CNDD is known to be greater at lower elevations relative to higher elevations. We hypothesize that plants found in the mesic low elevation forests accumulate more host-specific fungal pathogens compared to plants found in the more xeric high elevation forests. Conversely, we hypothesize that plants found in the high elevation forests accumulate more host-specific mutualists compared to those found at low elevations. We test these hypotheses by evaluating three metrics of plant-associated fungal functional groups - alpha diversity, relative abundance, and host specificity - that together address the degree to which a plant recruits particular groups. We find the diversity, relative abundance and host specificity of soil fungal pathogens to decrease with elevation. In contrast, we find ectomycorrhizal fungal host specificity, but not diversity or relative abundance, to increase with elevation. Aboveground, we find a key foliar pathogen Nothophaeocryptocus gaeumanii to support our hypotheses as a dominant, and highly host specific pathogen that is enriched at low elevation sites. Our results indicate that across a climate gradient known to negatively covary with CNDD strength, soil pathogens recruitment is most prevalent in the mesic climates and, to a lesser extent, ectomycorrhizal recruitment is most prevalent in the xeric climates. Together these findings suggest that both pathogenic and mutualistic fungal symbionts could contribute to landscape level variation in competitive, intraspecific plant interactions.

ecology↗

AusAMF: database of arbuscular mycorrhizal fungal communities in Australia

MotivationArbuscular mycorrhizal (AM) fungi are integral to plant nutrient acquisition, carbon cycling, and ecosystem resilience, yet our knowledge of their biogeography is severely limited, especially in the Southern Hemisphere. Australia, despite its landmass and unique geoecological characteristics, has been vastly undersampled, leaving a significant gap in our understanding of AM fungal diversity and distribution. The AusAMF database was created to address this deficiency, the first release comprises AM fungal community data from 610 sampling locations across mainland Australia and Tasmania, collected between 2011 and 2023. Using standardised sampling, DNA extraction, sequencing methods and platforms, this database provides a robust resource for exploring spatial patterns in AM fungal diversity, community composition, and the ecological drivers shaping AM fungal biogeography. The AusAMF database will continue to be updated and maintain standardised approaches to facilitate future research into plant-mycorrhizal interactions, nutrient cycling, and to understand the broader role of AM fungi in ecosystem processes. The data here will provide the foundation for more informed management and conservation efforts in Australia while providing valuable data for global-scale analyses. Main types of variables containedGeoreferenced occurrence and abundance of high-throughput amplicon sequences of arbuscular mycorrhizal (AM) fungi. Spatial location and grainAustralia. Decimal degrees between 0.000001 - 0.1 resolution. Time period and grain2011-2023. Month and year of sampling. Major taxa and level of measurementArbuscular mycorrhizal fungi identified to family, genus, and virtual taxon (VT). Geographic occurrence and amplicon sequence abundance. Software formatInteract with data via online application. Dataset available as .csv files and raw sequencing data as .fastq files.

ecology↗