Albano, R. M. | Search bioRxiv

bioRxiv2019

Comparative genome analysis of a multidrug-resistant Pseudomonas aeruginosa sequence type 277 clone that harbours two copies of the blaSPM-1 gene and multiple single nucleotide polymorphisms in other resistance-associated genes

Pseudomonas aeruginosa is one of the most common pathogens related to healthcare-associated infections. The Brazilian isolate, named CCBH4851, is a multidrug-resistant clone belonging to the sequence type 277. The antimicrobial resistance mechanisms of the CCBH4851 strain are associated with the presence of blaSPM-1 gene, encoding a metallo-beta-lactamase, in addition to other exogenously acquired genes. Whole-genome sequencing studies focusing on emerging pathogens are essential to identify physiological key aspects that may lead to the exposure of new targets for therapy. This study was designed to characterize the genome of Pseudomonas aeruginosa CCBH4851 through the detection of genomic features and genome comparison with other Pseudomonas aeruginosa strains. The CCBH4851 closed genome showed features that were consistent with data reported for the specie. However, comparative genomics revealed the absence of genes important for pathogenesis. On the other hand, CCBH4851 genome contained acquired genomic islands that carry additional virulence and antimicrobial resistance-related genes. The presence of single nucleotide polymorphisms in the core genome, mainly those located in resistance-associated genes, suggests that these mutations could influence the multidrug-resistant behavior of CCBH4851. Overall, the characterization of Pseudomonas aeruginosa CCBH4851 complete genome revealed several features that could directly impact the profile of virulence and antibiotic resistance of this pathogen in infectious outbreaks.

genomics↗

bioRxiv2019

Microbiota of the alien species Paraleucilla magna (Porifera, Calcarea) from the Southwestern Atlantic, and a comparison with that of other calcareous sponges

Sponges (Porifera) co-evolved with microorganisms in a well-established symbiotic relationship. Based on this characteristic, sponges can be separated into high microbial abundance (HMA) and low microbial abundance (LMA) species. Paraleucilla magna (Calcarea, Porifera) is an alien species of ecological importance in the Brazilian coastline. Little is known about the composition of its microbiota and that of other calcareous species, especially those inhabiting the Southwest Atlantic. Here, we describe the microbiota of P. magna and compare it to that of other calcareous sponge species for which such data exist. P. magnas microbiota shows a lower diversity than that of Clathrina clathrus, C. coriacea, Leucosolenia sp., Leuconia sp. and Leucetta antarctica. P. magna microbiota is dominated by two bacterial OTUs of the Alphaproteobacteria class, that could not be classified beyond class (OTU001) and family levels (OTU002; Rhodospirillaceae). The Thaumarcheota was the predominant archaeal phylum in P. magna, with OTUs mainly affiliated to the genus candidatus Nitrosopumilus. The comparison with other calcareous species showed that microbiota composition correlated well with sponge phylogenetic affiliation. Metabolic prediction with PICRUSt software of P. magna bacterial microbiota indicated that membrane transport and carbohydrate, amino acid and energy metabolisms were most abundant while, for the archaeal domain, pathways related to translation, and energy metabolisms were predominant. Predicted metabolic features were compared between the different sponge species and seawater samples, showing that pathways related to cell motility, membrane transport, genetic information processing, xenobiotics metabolism and signal transduction are higher in the former while amino acid and nucleotide metabolism, translation, replication and repair, folding, sorting and degradation and glycan biosynthesis and metabolism are abundant in the latter. This study shows that P. magnas microbiota is typical of an LMA sponge and that it differs from the microbiota of other calcareous sponges both in its composition and in predicted metabolic pathways.

microbiology↗