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Akbari, N.

Publications and source records attributed to Akbari, N..

4 recordsLinked to original sources

Versatile Learning without Synaptic Plasticity in a Spiking Neural Network

Learning in the brains cerebral cortex is widely attributed to synaptic plasticity among cortical neurons. However, a growing body of evidence suggests that alternative processes, such as modulation of intrinsic excitability or gating by subcortical inputs, may also serve as important learning mechanisms. We developed the Bias Adaptive Neural Firing Framework (BANFF) as a simplified model of such phenomena embodied by a learnable bias current for each neuron of a rate-based network. Here, we extend this framework to spiking neural networks. We show that learning such biases enables one recurrent spiking neural network with fixed and random synaptic weights to perform well on nine tasks spanning classification, regression, and closed-loop dynamical systems mimicry. The network learnt a unique bias set for each task, and unlike recurrent synapse-based learning, new learning did not interfere with previous learning. The network was robust to non-stationary F-I curves (spike frequency adaptation), and biases could be learned with a learning algorithm (e-prop) that is more biologically plausible than stock gradient descent. Overall, we show that the BANFF can be extended from rate-based to spiking neural networks, maintaining good multi-task performance with a single network of spiking neurons.

neuroscience↗

Direct Training of Networks of Morris-Lecar Neurons withBackprop

Spiking Neural Networks (SNNs) have the potential to replicate the brains computational efficacy by explicitly incorporating action potentials or "spikes", which is not a feature of most artificial neural networks. However, training SNNs is difficult due to the non-differentiable nature of the most common spiking models: integrate-and-fire neurons. This study investigates if some of the difficulty in training SNNs arises from the use of integrate-and-fire neurons, rather than smoother alternatives, like conductance-based neurons. To that end, we considered networks of Morris-Lecar (ML) neurons, a conductance-based neuron model which is differentiable. Networks were built using kinetic synaptic models that smoothly link presynaptic voltage dynamics directly to postsynaptic conductance changes, ensuring that all components remain fully differentiable. Switching to biophysically detailed models of synapses and neurons enabled direct end-to-end training through Backpropagation Through Time (BPTT). Biophysically detailed networks were successfully trained on image classification, regression, and time series prediction tasks. These results demonstrate the feasibility of employing biophysically detailed differentiable point neuron models to create SNNs that function as more accurate paradigms for the study of neural computations and learning. Further, this work confirms that some aspects of the difficulty in translating gradient-based learning algorithms from machine learning may arise from model choice, rather than SNNs being intrinsically difficult to train. 1. Author summaryThe brains information-processing efficiency arises in part from neurons communicating via discrete spikes. Spiking Neural Networks (SNNs) mimic this process at the neuronal level but have been difficult to train as most machine learning algorithms are not directly applicable. Most SNNs use integrate-and-fire neurons, a modelling framework that simplifies spikes into non-differentiable, abrupt voltage changes, which makes them difficult to train with powerful, standard AI training methods that use derivatives to compute gradients (e.g. Backprop). In our work, we asked if this difficulty could be overcome by considering end-to-end differentiable spiking neural networks. We used completely differentiable SNNs using the Morris-Lecar neuron, a biophysically detailed neuron model that produces smooth spikes, along with differentiable kinetic synapses. With the entire network being mathematically differentiable, we found that we could train it directly using standard backpropagation through time on different tasks (regression, classification, and chaotic time series prediction). This work demonstrates that the use of integrate-and-fire models may be limiting applications of machine learning algorithms towards understanding how learning functions in the brain.

neuroscience↗

Label-free multiphoton imaging reveals volumetric shifts across development in sensory-related brain regions of a miniature transparent vertebrate

Animals integrate information from different sensory modalities as they mature and perform increasingly complex behaviors. This may parallel differential investment in specific brain regions depending on the demands of changing sensory inputs. To investigate developmental changes in the volume of canonical sensory integration brain regions, we used third harmonic generation imaging for morphometric analysis of forebrain and midbrain regions from 5 to 90 days post fertilization (dpf) in Danionella dracula, a transparent, miniature teleost fish whose brain is optically accessible throughout its lifespan. Relative to whole brain volume, increased volume or investment in telencephalon, a higher order sensory integration center, and torus longitudinalis (TL), a midbrain visuomotor integration center, is relatively consistent from 5 to 30 dpf, until it increases at 60 dpf, followed by another increase at 90 dpf, as animals reach adulthood. In contrast, investment in midbrain optic tectum (TeO), a retinal-recipient target, progressively decreases from 30-90 dpf, whereas investment is relatively consistent across all stages for the midbrain torus semicircularis (TS), a secondary auditory and mechanosensory lateral line center, and the olfactory bulb (OB), a direct target of the olfactory epithelium. In sum, increased investment in higher order integration centers (telencephalon, TL) occurs as juveniles reach adulthood and exhibit more complex cognitive tasks, whereas investment in modality-dominant regions occurs in earlier stages (TeO) or is relatively consistent across development (TS, OB). Complete optical access throughout Danionellas lifespan provides a unique opportunity to investigate how changing brain structure over development correlates with changes in connectivity, microcircuitry, or behavior.

neuroscience↗

Whole-brain optical access in small adult vertebrates with two- and three-photon microscopy

Although optical microscopy has allowed us to study the entire brain in early developmental stages, access to the brains of live, adult vertebrates has been limited. Danionella, a genus of miniature, transparent fish closely related to zebrafish has been introduced as a neuroscience model to study the entire adult vertebrate brain. However, the extent of optically accessible depth in these animals has not been quantitatively characterized. Here, we show that two- and three-photon microscopy can be used to access the entire depth of the adult wild type Danionella dracula brain without any modifications to the animal other than mechanical stabilization. Three-photon microscopy provides high signal to background ratio and optical sectioning through the deepest part of the brain. While vasculature can be observed with two-photon microscopy, the deeper regions have low contrast. We show that multiphoton microscopy is ideal for readily penetrating the entire adult brain within the geometry of these animals head structures and without the need for pigment removal. With multiphoton microscopy enabling optical access to the entire adult brain and a repertoire of methods that allow observation of the larval brain, Danionella provides a model system for readily studying the entire brain over the lifetime of a vertebrate.

neuroscience↗