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Ahokainen, I.

Publications and source records attributed to Ahokainen, I..

2 recordsLinked to original sources

A unified model of short- and long-term plasticity: Effects on network connectivity and information capacity

Activity-dependent synaptic plasticity is a fundamental learning mechanism that shapes the connectivity and activity of neural circuits. Existing computational models of Spike-Timing-Dependent Plasticity (STDP) capture long-term synaptic changes with varying degrees of biological detail. A common approach is to neglect the influence of short-term dynamics on long-term plasticity, which may be an oversimplification for certain neuron types. Thus, there is a need for new models to investigate how short-term dynamics influence long-term plasticity. To address this gap, we introduce a novel phenomenological model, the Short-Long-Term STDP (SL-STDP) rule, which directly integrates the Tsodyks-Markram model of short-term dynamics with postsynaptic long-term plasticity. We fit the new model to recordings from layer 5 of the visual cortex and study how short-term plasticity affects the firing rate frequency dependence of long-term plasticity in a single synapse. Our analysis revealed that the pre- and postsynaptic frequency dependence of long-term plasticity plays a crucial role in shaping the self-organization of recurrent neural networks (RNNs) and their information processing through the emergence of sinks and source nodes. We applied the SL-STDP rule to RNNs and found that neurons in the SL-STDP network self-organize into distinct firing rate clusters, stabilizing the dynamics. We extended the experiments by including homeostatic balancing, namely weight normalization and excitatory-to-inhibitory plasticity, and observed differences in degree correlations between the SL-STDP network and a network without direct coupling between short-term and long-term plasticity. Finally, we evaluated how the modified connectivity affects the networks information capacity in reservoir computing tasks. The SL-STDP rule outperformed the uncoupled system in the majority of tasks, and including excitatory-to-inhibitory facilitating synapses further improved information capacity. Our study demonstrates that short-term dynamics-induced changes in the frequency dependence of long-term plasticity play a pivotal role in shaping network dynamics and link synaptic mechanisms to information processing in RNNs. Author summaryThe brain is a complex organ capable of developing, adapting and learning throughout life. Learning and development of the brain is facilitated by several different plasticity mechanisms that act on different brain areas and timescales. Computational modeling of these plasticity mechanisms not only help us to understand the working principles of the brain but can provide us useful algorithms for future computing devices. In this work, we develop a new activity-dependent plasticity model that acts locally in a synapse and combines two timescales of plasticity into one set of equations. We investigate the effects of this new synapse model on recurrently connected neural networks and observe changes in neural activity and connectivity compared to traditional approaches. We further evaluate the model by performing information capacity tests that are related to the working memory of the circuit. We find improved information capacity, indicating enhanced computational performance of the proposed model. Our study emphasizes how combining the two timescales of plasticity may be important for the development of neural circuits and working memory.

neuroscience↗

Modeling neuron-astrocyte interactions in neural networks using distributed simulation

Astrocytes engage in local interactions with neurons, synapses, other glial cell types, and the vasculature through intricate cellular and molecular processes, playing an important role in brain information processing, plasticity, cognition, and behavior. This study advances understanding of local interactions and self-organization of neuron-astrocyte networks and contributes to the broader investigation of their potential relationship with global activity regimes and overall brain function. We present six new contributions: (1) the development of a new model-building framework for neuron-astrocyte networks, (2) the introduction of connectivity concepts for tripartite neuron-astrocyte interactions in biological neural networks, (3) the design of a scalable architecture capable of simulating networks with up to a million cells, (4) a formalized description of neuron-astrocyte modeling that facilitates reproducibility, (5) the integration of experimental data to a greater extent than existing studies, and (6) simulation results demonstrating how neuron-astrocyte interactions drive the emergence of synchronization in local neuronal groups. Specifically, we develop a new technology for representing astrocytes and their interactions with neurons in distributed simulation code for large-scale spiking neuronal networks. This includes an astrocyte model with calcium dynamics, an extended neuron model receiving calcium-dependent signals from astrocytes, and a parallelized connectivity generation scheme for tripartite interactions between pre- and postsynaptic neurons and astrocytes. We verify the efficiency of our reference implementation through benchmarks varying in computing resources and network sizes. Our in silico experiments reproduce experimental data on astrocytic effects on neuronal synchronization, demonstrating that astrocytes consistently induce local synchronization in groups of neurons across various connectivity schemes and global activity regimes. By adjusting the strength of neuron-astrocyte interactions, we can switch the global activity regime from asynchronous to network-wide synchronization. This work represents an advancement in neuron-astrocyte modeling, introducing a novel framework that enables large-scale simulations of astrocytic influence on neuronal networks. Author summaryAstrocytes play an important role in regulating synapses, neuronal networks, and cognitive functions. However, models that include both neurons and astrocytes are underutilized compared to models with only neurons in theoretical and computational studies. We address this issue by developing theoretical concepts for representing astrocytic connectivity and interactions and provide a reference implementation supporting distributed parallel computing in the spiking neural network simulator NEST. Using these capabilities, we show how astrocytes help to synchronize neural networks under various connection patterns and activity levels. The new technology makes it easier to include astrocytes in simulations of neural systems, promoting the construction of more realistic, relevant, and reproducible models.

neuroscience↗