Search bioRxiv⌕ Search

Biology subjects

Ageev, A. A.

Publications and source records attributed to Ageev, A. A..

2 recordsLinked to original sources

Metabolomic profile for understanding heart failure classifications

BackgroundThe existing classifications of heart failure (HF) remain a topic of debate within the cardiology community. Metabolomic profiling (MP) offers a means to define HF phenotypes based on pathophysiological changes, allowing for more precise characterization of patient groups with similar clinical profiles. MP may thus aid in refining HF classifications and offer a novel approach to phenotyping. MethodsMP was performed to 408 patients with different stages of HF. Patients with symptomatic HF were divided into phenotypes by left ventricle ejection fraction (LVEF). Liquid chromatography combined with mass-spectrometry were used for the MP. Data were analyzed using machine learning. The relationship between the incidence of all-cause death and LVEF trajectory changes and metabolomic clusters was evaluated. Follow-up period was 542 days [16;1271] in average. ResultsThe classification model achieved an AUC ROC - 0.91 for distinguishing of Stage A from Stage B and an AUC ROC - 0,97 for Stage B vs. Stage C using metabolomic analysis, models performance for differentiating Stages C and D was lower (AUC ROC 0.81). For HF phenotypes, the HFrEF, HFmrEF, and HFpEF model demonstrated moderate accuracy (AUC ROC 0.74), whereas the model distinguishing HFpEF from HF with EF <50% showed good precision. The HFrEF vs. HF with EF >40% model, however, displayed low accuracy. Biostatistical processing of MP identified four metabolomic clusters, and 26 metabolites demonstrated the greatest significance (metabolites of the kynurenine and serotonin pathways of tryptophan catabolism, glutamine, riboflavin, norepinephrine, serine, long- and medium-chain acylcarnitines). Patients with reduced LVEF had the poorest prognosis (HR 1,896; 0,711-5,059), with an LVEF decrease linked to a threefold rise in all-cause mortality risk. Cluster 3 was associated with a 2,880-fold increase in all-cause mortality. ConclusionsOur findings suggest that MP provides an effective alternative approach for stratifying HF patients by stage. The observed metabolic similarities between HFpEF and HFrEF phenotypes highlight limitations in the current classification, underscoring the need to refine HF phenotyping into two primary categories. Hierarchical clustering by metabolomic profile produced a high-accuracy model, supporting MP as a valuable tool for HF classification. Novelty and SignificanceO_ST_ABSWhat Is Known?C_ST_ABSO_LIClassifying HF by stages offers the advantage of incorporating preventive aspects, however, diagnosing Stage B can be challenging due to the necessity of analyzing numerous parameters for verification. C_LIO_LIThe classification by LVEF, particularly distinguishing HFmrEF, remains controversial because of limited evidence for specific treatment strategies. C_LIO_LIMetabolomic profiling (MP) offers a means to identify unique pathophysiological changes across phenotypes, presenting a promising approach for diagnosing HF and developing targeted therapies. C_LI What New Information Does This Article Contribute?O_LIThis study demonstrates high accuracy in HF stage classification by integrating chromatography-mass spectrometry data with bioinformatic analysis through multiparametric machine learning (ML) models. C_LIO_LISimilarities between metabolomic profiles of patients with LVEF <40% and those with LVEF 41-49% suggest pathophysiological overlap between HFmrEF and HFrEF. C_LIO_LIMP, enhanced by ML, allows precise differentiation between HFpEF and patients with EF <50%, with an AUC ROC of 0.96. C_LIO_LIHierarchical clustering based on metabolomic profiles identified four distinct HF phenotypes, reflecting unique pathophysiological pathways with high accuracy (AUC ROC 0.96). C_LI This work highlights how metabolomic analysis provides insight into HFs biochemical landscape, aiding classification and offering potential new pathways for therapeutic intervention. The findings underscore MPs potential to improve HF phenotyping and understanding of disease mechanisms. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=142 SRC="FIGDIR/small/623517v1_ufig1.gif" ALT="Figure 1"> View larger version (65K): org.highwire.dtl.DTLVardef@173f141org.highwire.dtl.DTLVardef@e41c97org.highwire.dtl.DTLVardef@11386eorg.highwire.dtl.DTLVardef@8fee01_HPS_FORMAT_FIGEXP M_FIG O_FLOATNOGraphical abstractC_FLOATNO EF - ejection fraction; HF - heart failure; HFmrEF - heart failure with mid-range ejection fraction; HFpEF - heart failure with preserved ejection fraction; HFrEF - heart failure with reduced ejection fraction. C_FIG

biochemistry↗

A new microbiological weapon against lepidopteran pests

Nowadays researchers provide more and more evidence that it is necessary to develop an ecologically friendly approach to pest control. This is reflected in a sharp increase in the value of the biological insecticide market in recent decades. In our study, we found a virus strain belonging to the genus Cypovirus (Reoviridae); the strain was isolated from Dendrolimus sibiricus: that possesses attractive features as a candidate for mass production of biological agents for lepidopteran-pest control. We describe morphological, molecular, and ecological features of the new Cypovirus strain. This strain was found to be highly virulent to D. sibiricus (half-lethal dose is 68 occlusion bodies per second-instar larva) and to have a relatively wide host range (infects representatives of five families of Lepidoptera: Erebidae, Sphingidae, Pieridae, Noctuidae, and Lasiocampidae). The virus strain showed a strong interaction with a nontoxic adjuvant (optical brightener), which decreased the lethal dose for both main and alternative hosts, decreased lethal time, and may expand the host range. Moreover, we demonstrated that the insecticidal features were preserved after passaging through the most economically suitable host. By providing strong arguments for possible usefulness of this strain in pest control, we call on virologists, pest control specialists and molecular biologists to give more attention to the Cypovirus genus, which may lead to new insights in the field of pest control research and may provide significant advantages to compare with baculoviruses and Bacillus thuringiensis products which are nowadays main source of bioinsecticides. Significance statementWithin this article we are describing unique set of features of newly discovered cypovirus strain which possess by significant premises for modern biological insecticides requirements: high potency, universality, true regulating effect, flexible production (possibility to choose host species for production), interaction with enhancing adjuvants, ecologically friendly. Basing on genome alignment we suggest that increasing of host range of new strain is the sequence of evolutionary event which was occurred after coinfection of different CPV species within same host. This finding open new perspective to consider CPVs as perspective agent of biocontrol products.

microbiology↗