Biology subjects

Adachi, M.

Publications and source records attributed to Adachi, M..

7 recordsLinked to original sources

bioRxiv2026

Correlation-resolved sum-frequency generation microscopy of biological tissue with bright twin beams

Sum-frequency generation (SFG) driven by bright twin beams generated through high-gain parametric down-conversion comprises a coherent component arising from correlated mode pairs and an incoherent component arising from interactions between uncorrelated modes. Modal correlations can enhance coherent SFG in anisotropic nonlinear media, for example by extending the effective interaction length. Whether such correlations can likewise benefit image formation in heterogeneous biological tissue remains unknown. Here we address this question by performing SFG imaging of biological tissue using bright twin beams as the excitation source. Spectral decomposition of the SFG signal separates its coherent and incoherent components, allowing us to reconstruct co-registered images and examine how twin-beam correlations influence image formation. In mouse skeletal muscle, the coherent-component image revealed sarcomere periodicity with a Bragg-spot-to-background ratio of approximately 310, compared with 7.5 in the incoherent-component image. In fresh human dermis, the coherent-component image showed greater Fourier power than the incoherent-component image in the 0.30-0.50 \mu m^{-1} band and a greater fractional autocovariance decay at short spatial lags. These results demonstrate that twin-beam correlations can enhance contrast and detectability at selected spatial frequencies in heterogeneous tissue. Correlation-resolved SFG microscopy thus offers a route for exploiting bright quantum-light sources in nonlinear optical bioimaging.

biophysics↗

bioRxiv2026

Regulating Light-Harvesting Protein Assembly through Engineered Trimers of Phycocyanin and Allophycocyanin

Phycobiliproteins form oligomeric assemblies essential for photosynthetic light harvesting. Here, we engineered phycocyanin (TeCPC) and allophycocyanin (TeAPC) from Thermosynechococcus elongatus to stabilize defined trimers by inhibiting hexamer formation. Structure-guided substitutions at conserved glycine residues (TeCPC G29R, TeAPC G21R) introduce steric hindrance at the hexamer interface. Recombinant expression in Escherichia coli produced holoproteins with native-like chromophorylation. Biophysical and structural analyses confirmed homogeneous trimer formation and absence of higher-order assemblies. Thermal measurements indicated cooperative unfolding, supporting structural uniformity. These engineered trimers provide robust models for studying energy transfer in phycobiliproteins.

biochemistry↗

bioRxiv2026

Oribatid Mites Supply Tetrodotoxin to Poisonous Newts

Tetrodotoxin (TTX) is a potent neurotoxin widely distributed among marine and terrestrial animals, yet how terrestrial vertebrates acquire this toxin has been debated for decades. Here, we identify oribatid mites as the primary dietary sources of TTX for the Japanese fire-bellied newt, Cynops pyrrhogaster. We detect TTX and its analogs in the mites Scheloribates processus and Galumna sp. KM1, which are preferentially consumed by terrestrial newts. In a controlled toxification experiment, juvenile newts accumulated TTX after consuming TTX-bearing mites, directly demonstrating dietary sequestration. Our results demonstrate that the early terrestrial stage is critical for lifelong TTX acquisition in newts. Notably, we also detect pumiliotoxin, a poison-frog alkaloid, in S. processus, suggesting that newts and poison frogs have convergently evolved to exploit toxin-bearing microarthropods for chemical defense. We propose a "terrestrial toxic web" hypothesis in which oribatid mites act as a shared environmental reservoir linking putative microbial toxin production to vertebrate chemical defense, highlighting microarthropods as key mediators in terrestrial toxin flow.

ecology↗

bioRxiv2025

Gait transition mechanism from quadrupedal to bipedal locomotion in the Japanese macaque based on inverted pendulum

The ability of non-human primates to transition from quadrupedal to bipedal locomotion offers critical insights into both the evolution of human bipedalism and the principles of complex motor control. While quadrupedal and bipedal gaits in non-human primates have been studied, the dynamic mechanisms underlying the transition between these gaits remain poorly understood. Japanese macaques trained to walk bipedally have been reported to utilize inverted pendulum dynamics to achieve efficient bipedal locomotion. Given the intrinsic instability of inverted pendulum systems, which can induce large changes in movement with minimal control input, we hypothesized that this mechanism also contributes to the gait transition. To test this, we developed a neuromusculoskeletal model of the Japanese macaque that integrates a detailed musculoskeletal structure with a physiologically inspired motor control system. Through forward dynamics simulations, we generated a variety of movement patterns by systematically parameterizing motor commands, including failed transitions that are difficult to capture experimentally. We then applied dynamical systems analysis using on an inverted pendulum model to examine the underlying principles of the transition process. Our results demonstrate that successful gait transitions depend on generating an inverted pendulum motion through appropriate control of the forward step length of one hindlimb. These findings provide mechanistic insights into how Japanese macaques coordinate their complex musculoskeletal systems to perform skilled, full-body movements in the gait transition, offering a deeper understanding of both advanced motor control and the evolution of human bipedalism.

neuroscience↗

bioRxiv2023

The odor of a nontoxic tetrodotoxin analog, 5,6,11-trideoxytetrodotoxin, is detected by specific olfactory sensory neurons of the green spotted puffers but is processed in overlapping olfactory bulbar area with food odors.

Toxic puffers accumulate tetrodotoxin (TTX), a well-known neurotoxin, by feeding on TTX-bearing organisms and using it to defend themselves from predators. Our previous studies have demonstrated that toxic puffers are attracted to 5,6,11-trideoxytetrodotoxin (TDT), a nontoxic TTX analog that is simultaneously accumulated with TTX in toxic puffers and their prey. In addition, activity labeling using immunohistochemistry targeting neuronal activity marker suggests that TDT activates crypt olfactory sensory neurons (OSN) of the green spotted puffer. However, it remains to be determined whether individual crypt OSNs can physiologically respond to TDT. By employing electroporation to express GCaMP6s in OSNs, we successfully identified a distinct group of oval OSNs that exhibited a specific calcium response when exposed to TDT in green spotted puffers. These oval OSNs showed no response to amino acids (AAs), which serve as food odor cues for teleosts. Furthermore, oval morphology and surface positioning of TDT-sensitive OSNs in the olfactory epithelium closely resemble that of crypt OSNs. These findings further substantiate that TDT is specifically detected by crypt OSNs in green spotted puffer. The TDT odor may act as a chemoattractant for finding conspecific toxic puffers and for feeding TTX-bearing organisms for effective toxification.

zoology↗

bioRxiv2021

Green spotted puffer can detect an almost nontoxic TTX analog odor using crypt olfactory sensory neurons

Tetrodotoxin (TTX) is a well-known neurotoxin that functions as a defense substance for toxic puffers. Several behavioral studies reported that TTX attracts toxic puffers belonging to the genus Takifugu. Although our electrophysiological and behavioral studies showed that a TTX analog, 5,6,11-trideoxyTTX, acts as an olfactory chemoattractant for grass puffers (T. alboplumbeus), it is unclear whether toxic puffers are commonly attracted to 5,6,11-trideoxyTTX, and which types of olfactory sensory neurons (OSNs) detect 5,6,11-trideoxyTTX. Here we investigated whether the green spotted puffer (Dichotomyctere nigroviridis), a phylogenetically different species from the grass puffer, is attracted to 5,6,11-trideoxyTTX. Administration of 5,6,11-trideoxyTTX attracted green spotted puffers, but TTX or vehicle did not. Furthermore, immunohistochemistry of the olfactory epithelium exposed to 5,6,11-trideoxyTTX with an antibody against phosphorylated ribosomal protein S6 (pS6), a neuronal activity marker, labeled oval cells with apical invagination. These oval cells were also labeled by the antibody against S100, a specific marker of crypt OSNs. Thus, our results suggest that 5,6,11-trideoxyTTX acts as an olfactory chemoattractant that is detected by crypt-type OSNs in the olfactory epithelium of green spotted puffers. Toxic puffers may use 5,6,11-trideoxyTTX as an olfactory chemoattractant involved in reproduction and parental care or as an olfactory cue of TTX-bearing organisms for effective toxification. Summary statementBehavioral and immunohistochemical experiments suggest that an almost nontoxic TTX analog, 5,6,11-trideoxyTTX, acts as an olfactory chemoattractant for green spotted puffers, and crypt-type olfactory sensory neurons detect it.

zoology↗

bioRxiv2021

Almost nontoxic tetrodotoxin analog, 5,6,11-trideoxytetrodotoxin, as an olfactory chemoattractant for the grass puffer

Toxic puffers contain the potent neurotoxin, tetrodotoxin (TTX). Although TTX is considered to serve as a defense substance, previous behavioral studies have demonstrated that TTX acts as an attractive pheromone for some toxic puffers. To elucidate the physiological mechanism of putative pheromonal action of TTX, we examined whether grass puffers Takifugu alboplumbeus can detect TTX. Electroolfactogram (EOG) results suggest that the olfactory epithelium (OE) of grass puffers responded to a type of TTX analog (5,6,11-trideoxyTTX), although it did not respond to TTX. We also examined the attractive action of 5,6,11-trideoxyTTX on grass puffers by recording their swimming behavior under dark conditions. Grass puffers preferred to stay on the side of the aquarium where 5,6,11-trideoxyTTX was administered, and their swimming speed decreased. Additionally, odorant-induced labeling of olfactory sensory neurons by immunohistochemistry against neural activity marker (phosphorylated extracellular signal regulated kinase; pERK) revealed that labeled olfactory sensory neurons were localized in the region surrounding "islets" where there was considered as nonsensory epithelium. 5,6,11-trideoxyTTX has been known to accumulate in grass puffers, but its toxicity is much lower (almost nontoxic) than TTX. Our results suggest that toxic puffers may positively use this TTX analog, which has been present in their body with TTX but whose function was unknown, as an odorant for chemical communication or effective TTX accumulation.

zoology↗