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Biology subjects

Acevedo, M.

Publications and source records attributed to Acevedo, M..

4 recordsLinked to original sources

Soil microbial diversity alters soil microhydrology through extracellular polymeric substance production

Soil microbial communities have a variety of mechanisms to deal with emerging drought stress. One well-documented mechanism is increased microbial production of extracellular polymeric substances (EPS), which can potentially change the soil density and water holding capacity. Yet little is known about how microbial diversity influences the functional capacity of EPS formation and the resulting outcomes in water dynamics. To understand more about communal microbiome EPS production, we set up sterile mesocosms where we examined the effects of microbial diversity (high or low treatments) and nutrient input (supplement or deficient treatments) on these processes. To capture the microhydrology of the mesocosms, we measured water holding (WH), infiltration, evaporation, and soil properties we believe microbes are altering (EPS, soil aggregation). Our hypothesis stated that if diversity was artificially manipulated, then soil-water properties will be altered via production of EPS. We predicted that low diversity systems would have lower functional diversity, leading to less EPS production, moisture storage, and minimal changes from inert soil media. As predicted, we found that the high-diversity systems had a higher water retention and lower rates of water loss over time than low-diversity systems. This trend was magnified in the nutrient-supplemented treatment, suggesting that EPS production and subsequent water-holding traits are emergent features of the microbiome. Unexpectedly, we observed a correlation between the amount of water retained and the quantity of lipid EPS produced. This suggests that EPS composition, rather than quantity, is determinative of a biofilms function. In conclusion, it appears that microbial diversity influences soil properties that are important to moisture retention within these systems. To date, the role that microbes and their diversity play in soil hydrology has been severely understudied, so this work aims to build ecological understandings of these systems. These findings are valuable, for if we learn how microbes manipulate soil moisture, we can apply these functions to advance sustainable agricultural practices and enhance ecosystem resilience to water scarcity in arid regions. Open Research StatementUpon publication data, and code will be made available through Zenodo. Sequencing data will be uploaded to NCBI SRA.

ecology↗

DEAD-box RNA helicase DDX3X maintains the homeostasis of the Zika virus translation-replication cycle

DDX3X is a cellular DEAD-box ATP-dependent RNA helicase known to play pivotal roles during the replication cycle of different viruses including some flaviviruses. Whether DDX3X plays a role during replication of Zika virus (ZIKV), a mosquito-borne flavivirus with a broad tissue tropism, has not been explored in detail. Here, we show that DDX3X is required for efficient ZIKV replication in a human microglia cell line but no other cell lines. Mechanistically, we provide evidence showing that DDX3X is recruited to the viral replication compartments where it binds to the 5UTR of the ZIKV RNA and promotes viral protein synthesis in an ATP-dependent manner. We also show that DDX3X binds to the viral RNA-dependent RNA polymerase NS5 and interferes with viral RNA synthesis in an ATP-independent manner. Such an effect was not observed during replication of Dengue 2 virus in human microglia, revealing specific roles for DDX3X in the regulation of the translation-replication cycle of ZIKV in human microglia. IMPORTANCEZika virus emerged as a major threat to humans due to its pandemic potential and its association with birth defects and neurological complications. The lack of available vaccines or specific treatments makes the understanding of Zika virus-host interactions a priority. Here, we demonstrate a mechanism by which DDX3X, a cellular ATP-dependent RNA helicase, promotes Zika virus replication by regulating the translation-replication cycle in a human microglia cell line. Considering the threat of this virus to the human population and the wide range of RNA viruses that usurp this host protein to accomplish the replication cycle, DDX3X continuously rises as a potential and valuable target for pharmacological intervention.

microbiology↗

Genome-wide screen overexpressing mycobacteriophage Amelie genes identifies multiple inhibitors of mycobacterial growth

The genome sequences of thousands of bacteriophages have been determined and functions for many of the encoded genes have been assigned based on homology to characterized sequences. However, functions have not been assigned to more than two-thirds of the identified phage genes as they have no recognizable sequence features. Recent genome-wide overexpression screens have begun to identify bacteriophage genes that encode proteins that reduce or inhibit bacterial growth. This study describes the construction of a plasmid-based overexpression library of 76 genes encoded by Cluster K1 mycobacteriophage Amelie, which is genetically similar to Cluster K phages Waterfoul and Hammy recently described in similar screens and closely related to phages that infect clinically important mycobacteria. 26 out of the 76 genes evaluated in our screen, encompassing 34% of the genome, reduced growth of the host bacterium Mycobacterium smegmatis to various degrees. More than one-third of these 26 toxic genes have no known function, and 10 of the 26 genes almost completely abolished host growth upon overexpression. Notably, while several of the toxic genes identified in Amelie shared homologs with other Cluster K phages recently screened, this study uncovered eight previously unknown gene families that exhibit cytotoxic properties, thereby broadening the repertoire of known phage-encoded growth inhibitors. This work, carried out under the HHMI-supported SEA-GENES project (Science Education Alliance Gene-function Exploration by a Network of Emerging Scientists), underscores the importance of comprehensive overexpression screens in elucidating genome-wide patterns of phage gene function and novel interactions between phages and their hosts.

microbiology↗

The drivers and consequences of unstable Plasmodium dynamics: A 26-year study of three malaria parasite species infecting a tropical lizard

O_LIThe dynamics of vector-borne parasites are driven by interactions between factors intrinsic to the parasite, its host, as well as environmental fluctuations. Understanding these interactions requires a long-term view, especially to predict the consequences of climate change on parasite dynamics.\nC_LIO_LIThe goal of this study is to evaluate temporal fluctuations in individual probability of infection, its environmental drivers and consequences for host body condition, of three malaria parasites (Plasmodium azurophilum, P. leucocytica, and P. floridense) infecting the lizard, Anolis gundlachi, in the rainforest of Puerto Rico.\nC_LIO_LIWe conducted 13 surveys totaling N > 8000 lizards over 26 years. During the early years of the study, the lizards probability of infection by all three Plasmodium species appeared stable despite disturbances from short droughts and small to moderate hurricanes.\nC_LIO_LIOver a longer timescale, we found that the individual lizard probability of infection and overall prevalence varied significantly over the years, and this fluctuation was driven in non-linear ways by variations in temperature and rainfall. The probability of infection was maximized at intermediate levels of temperature and precipitation. This temporal variability in Plasmodium prevalence driven by environmental factors had two important consequences. First, temperature-mediated a decrease in body condition in infected female lizards relative to non-infected ones. Second, Plasmodium parasite species composition varied through time.\nC_LIO_LIOverall, the results show how environmental conditions, such a severe drought, can drive disease dynamics outside of their apparent stable equilibrium and mediate the potential negative effects of parasite infection on the host. Our results also emphasize the need for long-term studies to reveal host-parasite dynamics, their drivers and consequences.\nC_LI

ecology↗