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Abernathy, M.

Publications and source records attributed to Abernathy, M..

2 recordsLinked to original sources

Ferrosome Organelles Spatially Insulate a Redox-Active Ferrous Phosphate Biomineral from Cytosolic ROS Chemistry

Ferrosomes are recently discovered lipid-bound bacterial organelles that store iron as iron-phosphate biominerals, yet the chemical nature and physiological consequences of ferrosome-stored iron remain poorly understood. Here, we combined X-ray absorption spectroscopy (XAS), electron microscopy, inductively coupled plasma mass spectrometry (ICP-MS), and physiological analyses to characterize ferrosome iron in Clostridioides difficile. XAS analysis of isolated ferrosomes revealed an amorphous iron-phosphate biomineral containing mixed Fe(II)/Fe(III), consistent with partial oxidation during aerobic isolation. In contrast, whole-cell XAS of intact anaerobically maintained cells demonstrated that ferrosomes predominantly contain a structurally disordered ferrous phosphate biomineral with local Fe-O-P coordination features similar to those of vivianite. Upon air exposure, this ferrous biomineral rapidly oxidized to a ferric phosphate-like state, revealing a highly oxygen-sensitive iron-storage phase. Despite containing abundant redox-active Fe(II), ferrosome-stored iron contributed minimally to the cytosolic labile iron pool. Consistent with this observation, isolated ferrosomes exhibited little ROS-generating activity, and ferrosome-overproducing cells displayed no substantial increase in sensitivity to oxygen, peroxide, or paraquat stress relative to ferrosome-deficient controls. Together, these results establish ferrosomes as iron-storage organelles that sequester redox-active Fe(II) in a mineralized ferrous phosphate phase, limiting its participation in cytosolic ROS chemistry and providing a mechanism for the safe storage of reactive iron. Significance StatementIron is essential for life but can also damage cells because ferrous iron drives oxidative stress. How cells store large amounts of ferrous iron while limiting toxicity therefore remains a fundamental biological question. Ferrosomes are recently discovered bacterial organelles that store iron as iron-phosphate biominerals, but the chemical nature and physiological consequences of ferrosome-associated iron remained unknown. Using Fe K-edge X-ray absorption spectroscopy, we show that ferrosomes in Clostridioides difficile contain a redox-sensitive ferrous phosphate biomineral. Physiological analyses demonstrate that this iron is largely inaccessible to cytosolic reactive oxygen species (ROS) chemistry. These findings reveal that bacteria can combine biomineralization and subcellular compartmentalization to maintain large intracellular iron reservoirs while limiting iron-dependent oxidative damage.

microbiology↗

Use of Substrate Analogues and X-ray spectroscopy Reveals an all Ferrous C-Cluster in CO Dehydrogenase

Carbon monoxide (CO) dehydrogenase (CODH) plays a key role in prokaryotic one-carbon metabolism by detoxifying CO and by driving CO2 reduction coupled to ATP production in the Wood-Ljungdahl Pathway. Here we focus on a Ni-Fe CODH (CODH-II), with an active site C-cluster, which is a [NiFe4S4] cluster arranged as a [NiFe3S4] subcluster with an additional, unique pendant Fe, e.g., [Fe3S4-Feu]. It catalyzes the reversible reduction of CO2 to CO without the requirement for an overpotential and with insignificant proton reduction. The redox states associated with catalysis are defined as Cred1 and Cred2. Despite crystal structures with near 1.0 A resolution, it has been a long-standing question where the electrons in these catalytically relevant redox states are stored within the C cluster. Using X-ray absorption spectroscopy (XAS), EPR, and substrate-analogue binding measurements, we clarify the electronic structure of these catalytically active states in addition to the resting state of CODH. We rule out recent postulates that catalysis involves a Ni0 state, a metal-metal bond, or a hydride intermediate. We reveal that CODH rests in the diamagnetic Cox form, which contains Ni2+ and an oxidized [Fe3S4-Feu]2+ cluster. Then, the C-cluster undergoes reductive activation on Fe to form paramagnetic Cred1, which binds CO and analog cyanide. Generation of Cred2, which binds CO2 and its analog cyanate, involves two sequential valence-localized electron transfers, generating Ni1+ and then [Fe3S4-Feu], forming an all-ferrous cluster. Our work sheds light on how CODH avoids the thermodynamically unfavorable generation of a CO2 radical anion intermediate formed in other catalytic systems by stabilizing electron density in the heterometallic C-cluster. We also highlight the importance of high-resolution XAS and use of substrate analogs to reveal the sequential, valence-localized electron transfers that occur during redox-dependent CODH catalysis. TOC Figure O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=93 SRC="FIGDIR/small/700957v1_ufig1.gif" ALT="Figure 1"> View larger version (21K): org.highwire.dtl.DTLVardef@1e8d3caorg.highwire.dtl.DTLVardef@a89cc9org.highwire.dtl.DTLVardef@1cd569dorg.highwire.dtl.DTLVardef@1f1668c_HPS_FORMAT_FIGEXP M_FIG C_FIG

biophysics↗