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Abbaspourrad, A.

Publications and source records attributed to Abbaspourrad, A..

11 recordsLinked to original sources

Microfluidic cultivation enables probiotic growth under thermal stress

Thermal stress tolerance is essential for preserving the viability and functionality of probiotic bacteria. Conventional batch cultures offer limited control over temperature changes across space and time. We have introduced an integrated microfluidic platform to continuously cultivate bacteria within a precisely defined and tunable thermal environment, and used Lacticaseibacillus rhamnosus as a model system. The device features serially connected microchambers with independently controlled heating zones, creating distinct and dynamic thermal profiles as the bacteria travel from one microchamber to the next. Biomass accumulation was observed at 37 {degrees}C within 48 h in all microchambers, no growth occurred at 49 {degrees}C even after 72 h. When the cells were exposed to a periodic thermal landscape, where an increase in temperature in one chamber was followed by a return to 37 {degrees}C in the next, growth was observed in the last chamber (49 {degrees}C) after three days indicating adaptation to thermal stress. Cells that grew on-chip at 49 {degrees}C showed no growth in off-chip experiments. Continuous monitoring of pH at the chip outlet confirmed ongoing metabolic activity in growing populations. Tailored microfluidic thermal environments were shown to help bacteria grow even under otherwise inhibitory conditions.

bioengineering↗

Ethanol-assisted core-shell microparticles for enzyme stabilization with precise size control

In vegetarian diets, phytate is known to disrupt the adsorption of minerals. Fortifying foods with phytase, a therapeutic enzyme known to mitigate phytate, might increase the uptake of important nutrients. Phytase is susceptible to environmental stress such as heat and acidic conditions encountered during food processing. Therefore, we developed and optimized a core-shell microparticle composed of a phytase-chitosan core and a shell consisting of cross-linked alginate-{kappa}-carrageenan. Ethanol was used to precipitate the microparticles, and the ethanol concentration was optimized along with the chitosan and phytase ratio and the alginate-carrageenan concentration, to form stable core-shell microparticles. The optimized core-shell microparticles have a loading capacity of 32.7% with a high encapsulation efficiency of 80.3% and uniform micro-size with a diameter of 3.2 {micro}m and a poly-dispersity index of 0.178. Loaded phytase retained 62.7% enzymatic activity after heat treatment and digestion conditions. These results indicate that core-shell microparticles are suitable for retaining enzyme activity within the food matrix under typical food processing conditions. HighlightsO_LIDevelopment of size-controlled core-shell microparticles to protect phytase C_LIO_LIPhytase-chitosan microparticles are surrounded by an alginate-{kappa}-carrageenan shell C_LIO_LIOptimization achieved 32.7% loading capacity with a uniform size of 3.2 {micro}m C_LIO_LICore-shell microparticles retained 62.7% enzyme activity after heat and digestion C_LIO_LIPhytase powder (2 mg) is required for a single maize meal C_LI

biochemistry↗

Core-shell microparticle encapsulation for pH-responsive and targeted delivery of lactoferrin and ferrous sulfate

Microgel beads of amidated low methoxy pectin and bovine lactoferrin were formed by external gelation of a water in oil emulsion with ferrous sulfate. The stability of the lactoferrin to gastric digestion and proteolysis by pepsin was determined by gel electrophoresis. The microparticles were then dispersed in chitosan and the resulting mixture was spray dried to form a shell that is insoluble at neutral pH conditions. The iron content of the microparticles without chitosan was 34 mg g-1 and with chitosan was 27 mg g-1. The addition of chitosan lead to reduced iron release at pH 7 (30%) compared to 60% iron release without chitosan, but did not prevent iron from releasing in acidic conditions (pH 1). The core shell microparticle system shows promise as an iron fortificant in food applications.

biochemistry↗

Adaptive surface sensing enables mammalian sperm navigation in complex environments

During transit through the fallopian tube of the female reproductive tract, sperm encounter a structurally complex lattice-like environment characterized by confinement and curvature created by the folded epithelium of the fallopian tube. To replicate these conditions, we examined sperm scattering and migratory behavior in microfabricated obstacle lattices with varying spacing. We found a passive adaptive sensing mechanism that regulates sperm surface interactions in confined and curved environments. Specifically, scattering dynamics, including the collision angle, were impacted as sperm navigated the lattice, and surface interaction times were reduced under more confined conditions. A mathematical model was developed to describe sperm transport in these structured landscapes, predicting up to a nine-fold enhancement of diffusivity compared to free swimming sperm. Hyperactivated sperm displayed similar adaptive behavior within the lattice. We found that sperm dynamically adjust their navigation strategy in response to environmental geometry, allowing efficient migration despite confinement. More broadly, the study highlights how physical structure modulates microswimmer behavior and provides new insight into the physical processes that govern sperm navigation and the mechanisms underlying mammalian fertilization.

biophysics↗

Improving Thermal and Gastric Stability of Phytase via pH Shifting and Coacervation: A Demonstration of Bayesian Optimization for Rapid Process Tuning

Phytase (phyA) breaks down phytate, which can help with nutrient absorption in a plant-based seed diet or high-phytate food. Unfortunately, it is prone to denaturation at food preparation temperatures and is easily inactivated by pepsin during gastric digestion. To protect phyA for use in high-temperature processes (100 {degrees}C) and gastric digestion, chitosan (CS) was used to complex phyA. Bayesian optimization, a machine learning technique, was used to demonstrate how to expedite the optimization process. Thermal stability of the optimized complex increased from 20% (Control: phyA in the native state) up to 74% at 4:1 CS to phyA (CS-phyA) complex and 52% at the 1:1 CS-phyA complex as measured by phytase activity assay. Chitosan complexation also improved the retention of enzyme activity after thermal and gastric digestion by 13-fold, retaining residual activity at 40% for the 4:1 CS to phyA and 22% for the 1:1 CS-phyA complexes compared to the enzyme itself, which only retained 3% residual activity. Molecular docking and circular dichroism were used to investigate the underlying interaction mechanism between CS and phyA and the secondary structure of the enzyme after heat treatment. Confocal laser scanning microscopy (CLSM) and scanning electron microscopy (SEM) confirmed the complexation of phyA with CS and revealed complex morphology. With improved enzyme stability, there is great potential for efficiently expanding phytase applications in a high plant-based seed food matrix. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=121 SRC="FIGDIR/small/649602v1_ufig1.gif" ALT="Figure 1"> View larger version (30K): org.highwire.dtl.DTLVardef@889b76org.highwire.dtl.DTLVardef@969ed3org.highwire.dtl.DTLVardef@953e55org.highwire.dtl.DTLVardef@2f5864_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIThermal stability of phytase improved from 20% to 74% using chitosan C_LIO_LIpH shifting increased enzyme complexation efficiency and thermal stability (100 {degrees}C) C_LIO_LIBayesian optimization (BO) is a promising optimization tool for complexation conditions C_LI

biochemistry↗

Core-Shell Hydrogel System to Protect the Enzyme Activity of Phytase from Environmental Stress

Fortification of phytase from Aspergillus niger (phyA) in a vegetarian diet is a practical strategy to solve mineral deficiencies induced by the presence of phytate. To protect phyAs activity and retention from environmental stress such as heat and acidic conditions, we evaluated the use of a core-shell hydrogel bead, where the core is composed of a phyA-chitosan complex, and the shell is formed by cross-linking alginate with {kappa}-carrageenan. The phyA loading capacity is 52.2%, with high encapsulation efficiency (82.6%). When forming the hydrogel beads, a needle diameter of 0.5 mm can create a 2.5 mm bead. The beads were found to remain intact during dehydration under a vacuum at 30 . The formed hydrogel beads protected 79.7% of the phyA activity after heating at 100 {degrees}C for 12 min. The beads protected their cargo against salt, pH changes, and protease. These results suggest that core-shell beads are suitable for protecting enzyme activity against various processing stresses, which makes them useful as a delivery method for phytase in food applications.

biochemistry↗

Improved Thermal Stability of Lactoferrin and Oxidative Stability of Iron(II) Sulfate by Co-encapsulation with Low-Methoxyl Pectin

Complex coacervates between bovine lactoferrin (LF) and low-methoxyl pectin (LMP) were prepared to encapsulate and deliver Fe(II) as an iron fortification ingredient in food, with the goal of enhancing the protein thermal stability and minimizing Fe(II) oxidation. The impact of pH and biopolymer ratio was investigated in terms of complex yield and iron encapsulation efficiency. The thermal stability of LF at 95 {degrees}C was determined by changes in turbidity, particle size, and LF retention by HPLC. The interaction between LF and LMP prevented thermal aggregation and circular dichroism analysis showed the complexation preserved the secondary structure of the protein. LF-LMP-Fe complexes contained 28-74 mg g-1 of total iron depending on the pH of formation, with <5% of the Fe released at neutral pH. The complex coacervation system shows promise as a thermally stable ingredient for iron delivery and food fortification.

biochemistry↗

Ladder shaped microfluidic system enabling rapid antibiotic susceptibility testing with standardized concentration panel

Antibiotics are often prescribed before pathogens are identified and susceptibility to the prescribed drug is confirmed; laboratory results may take up to 3 days. Using rapid antibiotic susceptibility testing (AST) this timeline can be compressed. We designed a microfluidic ladder-based system that generates a twofold serial dilution of antibiotics comparable to current national and international standards. This consolidated design, with minimal handling steps, has cut down the time-to-result for AST from 16-20 h to 4-5 h. Our system has a 91.75 % rate of agreement with the commercial AST system for Gram-negative and Gram-positive bacterial isolates from canine urinary tract infections (UTI) tested against seven clinically relevant antibiotics. Overall, the system showed a matching rate of 92.71 % - 94.54 % with Gram-negative pathogens, and 85.00 % - 88.57 % with Gram-positive pathogens with no statistical difference between the pathogens or antibiotics. We also tested bacteria filtered directly from urine samples, potentially reducing the total sample-to-result time from 2-3 days to 4 hours.

microbiology↗

Computational Elucidation of Recombinant Fusion Protein Effect on Peptide-Directed Nanoparticles

Nanoparticles synthesized using various peptides have optimized properties and functional abilities which can be achieved via peptide flexibility and site specificity. Using peptide Pd4 and other alanine substitution combinations of Pd4 attached to a green fluorescent protein (GFPuv), nanoparticles with well-defined sizes that are soluble in aqueous solutions can be produced. In this study, extensive molecular dynamics simulations explored the structural and functional differences between the free peptides and the peptides bound to the GFPuv used in nanoparticle production. Binding affinities of histidines of Pd4 peptide and its two mutants A6 and A11 to a palladium atom were calculated using the free energy perturbation method. Interestingly, the average particle sizes obtained from transmission electron microscopy (TEM) images correlated with our calculated free energies of different peptide sequences. Remarkably, when the peptide was bound to GFPuv, the free energies of histidine were very similar in the wild-type and other mutated peptides. However, this trend is not observed with free peptide simulations, where binding affinities differ by mutation of histidine residues. This study describes, at a molecular level, the role of amino acid sequence on binding affinity of the peptide to the surface of the palladium particles, and the functional ability of the GFPuv protein controlling these free energies irrespective of peptide sequence. Our study will provide a framework for designing free and protein attached peptides that facilitate peptide-mediated nanoparticle formation with well-regulated properties.

bioengineering↗

Progressive Sperm Separation Using Parallelized, High-Throughput, Microchamber-based Microfluidics

Motility is one of the most important factors in sperm migration toward egg. Therefore, sperm separation based on motility increases the chance of the best sperm selection in the process of infertility treatments. Unfortunately, it is now vastly done by conventional procedures which lack certain delicacy and precision and increase the risk of damage to sperm cells. Microfluidic systems, on the other hand, can sort sperm in a less intrusive way. However, microfluidic techniques have yet to receive widespread adoption in clinical settings, not only due to their relatively cumbersome operation, but also their extremely low outcome, leaving them inefficient in practice. Here we propose a microchamber-based microfluidic platform that can separate progressive motile sperm from nonviable sperm and debris as well as trapped nonprogressive sperm in the microchambers. Our platform is operated in a short period of time (<10 min) with an excellent degree of controllability, without any prior sample preparation. Our results show that the microchambers depth does not affect the residence time of motile sperm. Therefore, we are able to inspect high sample volumes (1 mL) within the same time. Furthermore, we maximize the concentration of the collected sperm by tuning the washing medium flow rate above the sperm rheotactic threshold. We foresee that our microfluidic platform may provide a facile solution for high-throughput, robust, and easy-to-modify for collection of progressive sperm needed for assisted reproductive technologies (ARTs). Significance StatementAssisted Reproductive Technologies require efficient, minimally invasive, and fast methods of sperm separation. Centrifugation methods used in clinics and biological research labs, fall short in these aspects as they are low-yield, intrusive to sperms DNA, and time consuming. We have developed a microchamber-based microfluidic platform for high-throughput separation of progressive motile sperm from undiluted raw semen samples. The method was further optimized to increase the concentration of collected samples. Higher concentration of collected samples combined with higher motility of the separated sperm compared to those in raw semen, make it a suitable choice in clinical applications, fertility diagnostics, and fundamental research.

bioengineering↗

Effect of flagellar beating pattern on sperm rheotaxis and boundary-dependent navigation

The study of navigational mechanisms used by mammalian sperm inside a microenvironment yields better understanding of sperm locomotion during the insemination process, which aids in the design of tools for overcoming infertility. Near- and far-field hydrodynamic interactions with nearby boundaries and rheotaxis are known to be some of the steering strategies that keep sperm on the correct path toward the egg. However, it is not known how the beating patterns of sperm may influence these navigational strategies. In this study, we investigate the effect of flagellar beating pattern on navigation of sperm cells both theoretically and experimentally using a two-step approach. We first isolate bovine sperm based on their rheotactic behavior in a zone with quiescent medium using a microfluidic system. This step ensures that the swimmers are able to navigate upstream and have motilities higher than a selected value, even though they feature various flagellar beating patterns. We then explore the flagellar beating pattern of these isolated sperm and their subsequent influence on boundary-dependent navigation. Our findings indicate that rheotaxis enables sperm to navigate upstream even in the presence of circular motion in their motility, whereas boundary-dependent navigation is more sensitive to the circular motion and selects for progressive motility. This finding may explain the clinical importance of progressive motility in semen samples for fertility, as the flow of mucus may not be sufficiently strong to orient the sperm cells throughout the process of insemination. SignificanceFinding the egg and moving toward it while traversing the complex structure of the female reproductive tract is necessary for mammalian sperm. Previous studies have shown how sperm use navigational steering mechanisms that are based on swimming upstream (i.e. rheotaxis) and along the boundaries of the female reproductive tract. We demonstrate that the performance of theses navigational mechanisms is associated with the primary characteristics of sperm motility. In fact, sperm rheotaxis is more sensitive to the motility and thus average velocity of sperm while navigation via rigid boundaries is more sensitive to the flagellar beating pattern and selects for symmetric beating. Our results can be expanded to other autonomous microswimmers and their subsequent navigation mechanisms.

biophysics↗